I would guess that you have more than 51 layout folders. Correct?
For More Information see: 51 Layout Pop-Up Menu Folder limit…
This is one of many acknowledged bugs that can be found in the Known Bug List thread here in the Report an Issue section of the forum.
It can also be downloaded as a database file from: https://www.dropbox.com/s/jt09b82i0xijbu3/FMP%20Bugs.zip