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You need Server Administrator access. And then you can simply copy files you need, including layouts.
Not sure if this is what you have in mind, but you can also split a filemaker file into two files fairly easy. One file can hold all the interface elements and the second can simply hold the actual tables that store the data. You can host the data ("back end") file from your server and place the interface ("front end") file on your client machine with external data sources set to link it to the hosted back end file on the server.