Is the databases named differently? It sounds from your post that the profiles are named differently, but I would believe the databases would need to be named differently and that may be why the os is deleting the other because they are referring to the same database.
It is a separate database, and named differently.
I found problem in that I was using an older version of the APP MAKER. I thought I had installed 1.0.4, but turns out I had downloaded it, but wasn't using it. Deleted old version, entered information into latest version (1.0.4) and that solved it.