Can you post screen shot(s) of the file with "problems" as it appears in FMPro and as it appears in Web Direct?
Thank you! this may be a post for Product Issues
Perhaps @TSGal or @TSPigeon can help. Please list as much information as possible as suggested:
Product and version (e.g. FileMaker Pro 14.0.3)
OS and version
Browser and version (for WebDirect only)
How to replicate
Workaround (if any)