Thank you for your post!
I'm going to move this thread from the FileMaker Community Feedback Space (which is specifically for input on the Community itself) to the Discussions Space where you should receive more views and potentially more feedback on this topic!
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This may be the worst case of deprecating a feature. There is no way from FMI to automate it. You need open each object in old file, then save it by hand in OLE host application.
I don't know some plug-in or vbs / powershell script can automate it. There is possiblity if you use only one OLE host application.