It have come to my knowledge that I can not install FileMaker Server 16 on a AWS instance running Windows Server 2016 since they only use DataCentre Edition instead of Windows Server 2016 Standard OS. Since FileMaker Server 16 is not compatible with DataCentre Edition it is a problem trying to run latest Windows Server on AWS. AWS that FileMaker specifically have chosen for FileMaker Cloud.
I hope that FileMaker soon have a new version of FileMaker Server 16 that is compatible with AWS.
Anyone have any other useful information to this discussion?