Long time ago I used FMP6 with TS2003 and it worked good, the only condition I found was that you must have the number of licenses for the same number of concurrent users.
The FMP6 software was installed with a volume license key which allowed 10 users working in the same network so i could use a new instance of the program using TS up to 10 times.
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We run FMP 11 on a 32bit W2k8 server as one of our cloud servers and it runs fine. We only run v12 on our 64bit W2k8 R2 servers, but do have a customer running v11 on a local 64bit server with TS and again it runs fine.
We have limited experience with 2012 TS as yet, although we are currently carrying out tests on a VM instance and so far so good, albeit in a restricted test environment.
As with all installs on a TS server, you must use the 'change user /install' command before installing the FMP software.
All the best
Thanks for the information.
I would be very interested in hearing how your 2012 TS testing goes.