The only thing I can think of that would cause this is if the option in FileMaker Server is on for "List only the databases each user is authorized to access"
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Perfect analysis MattLeach! That was the cause.
I indeed changed that setting as well as part during the installation of the certificate.
I thought that users still would have to select one of those datases and then login.
Apparently Filemaker developers had other ideas of security than I have.
That's actually a good security measure to have. You don't want people to see all the databases they have no access to. FileMaker, Inc. is trying to follow the standards that are in the web world. Any website that you log into would show you content you are allowed to see. That is standard procedure.